Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAQREIQLFFAPDEILSYQKAVDTWI
2BEF Chain:B ((9-148))
-ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVK------
General information:
TITO was launched using:
RESULT:
Template:
2BEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67783 for 1067 contacts (-63.5/contact) +
2D Compatibility (PS) -14893 + (NN) -3754 + (LL) 880
1D Compatibility (HY) -14400 + (ID) 3900
Total energy: -103850.0 ( -97.33 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_2BEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BEF-query.scw
PDB file :
Tito_Scwrl_2BEF.pdb
: