Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRFFIDTANVEEIKKANRMGFISGVTTNPSLVAKEGRDFNEVIQEITSIVDGPISGEV---VSLEADEMIAEG-RVIAKIHPN------MVVKIPMTGEGLAAVKVLTEEGIKTNVTLVFSATQALLAARAGATYVSPFLGRLDDI--------------GDDGLVLIRDIADIFEIHGIPTEIISASVRHPIHVIECAKAGADIATVPFKVFEQMLKHPLTDSGIDKFLADWEAAKK
3TKF Chain:B ((111-288))
--------------------------------------------KILDVIEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIMIAATWEGIKAAKLLQKEGINCNLTLIFDKAQAKACAEAGVYLVSPFVGRITDWQMQQNNLKTFPAIADDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQVI--ALAGCDALTISPVLLEEL----------------------
General information:
TITO was launched using:
RESULT:
Template:
3TKF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99452 for 1156 contacts (-86.0/contact) +
2D Compatibility (PS) -16079 + (NN) -4770 + (LL) 4636
1D Compatibility (HY) -13200 + (ID) 2800
Total energy: -131665.0 ( -113.90 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_3TKF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TKF-query.scw
PDB file :
Tito_Scwrl_3TKF.pdb
: