Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELVNVSKKIQDKLILEKVSLSIGAGEFIAVVGESGSGKTTLLNVIGHLDSKDSGQVIINEMEYQTKKEVMTLKKEVLGFIFQNYLLMENETVLENLSITG-GENRKLMIEHLEEVG-------MDESY---LAKKVYQLSGGEKQRIAIVRILLKPFQLLLADEPTGNLDDKNKQKIIELFLALKKQGKTIVCVTHDPEISAKADRIIYIEGGEIR
2FGJ Chain:D ((18-221))
---------KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL-ADPNWLRRQV-GVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAARLSTVKNADRIIVMEKGKI-
General information:
TITO was launched using:
RESULT:
Template:
2FGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106166 for 1407 contacts (-75.5/contact) +
2D Compatibility (PS) -21444 + (NN) -11458 + (LL) 1596
1D Compatibility (HY) -16000 + (ID) 3250
Total energy: -156722.0 ( -111.39 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_2FGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FGJ-query.scw
PDB file :
Tito_Scwrl_2FGJ.pdb
: