Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLENDIKKVLYSEEDIILKTKELGAKLTADY-----AGKNPL-LVGVLKGSVPFMAELLKHID---THVEIDFMVVSSYHGGTTSSGEVKILKDVDTNIEGRDVIFIEDIIDTGRTLKYLRDMFKYRQANSVKVATLFDKPEGRLVDIDADYVCYDIPNEFIVGFGLDYAENYRNLPYVGVLKEEIYSK
1PZM Chain:A ((25-202))
-------RTLVTQEQVWAATAKCAKKIAADYKDFHLTADNPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICAS-------------MLLDVRDSVENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSGRKVDVLVDYPVITIPRAFVIGYGMDFAESYRELRDICVLKKE----
General information:
TITO was launched using:
RESULT:
Template:
1PZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126630 for 1173 contacts (-108.0/contact) +
2D Compatibility (PS) -16888 + (NN) -4094 + (LL) 932
1D Compatibility (HY) -18400 + (ID) 3000
Total energy: -168080.0 ( -143.29 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_1PZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PZM-query.scw
PDB file :
Tito_Scwrl_1PZM.pdb
: