Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIHIEAKQGEIADKILLPGDPLRAKFIAENFLEDAVCFNTVRNMFGYTGTYKGHRVSVMGTGMGMPSISIYARELIVDYGVKTLIRVGTAGAINPDIHVRELVLAQAAATNSNIIRNDWPEFDFPQIADFKLLDKAYHIAKEMDITTHVGSVLSSDVFYSNQPDRNM--ALGKLGVHAIEMEAAALYYLAAQHNVNALAMMTISDNLNNPEEDTSAEERQTTFTDMMKVGLETLISE
1PK7 Chain:B ((4-233))
---HINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLFYS--PDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQ-TTAAERQTTFNDMIKIALESVLLG
General information:
TITO was launched using:
RESULT:
Template:
1PK7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164554 for 1985 contacts (-82.9/contact) +
2D Compatibility (PS) -24409 + (NN) -8153 + (LL) 348
1D Compatibility (HY) -26400 + (ID) 5750
Total energy: -228918.0 ( -115.32 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_1PK7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PK7-query.scw
PDB file :
Tito_Scwrl_1PK7.pdb
: