Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLLSGQVALVTGGAAGIGRATALAFAAAGVKVVVADLDSAGGEGTVEAIRQAGGEALFIRCDVTRDAEVKALVEGCAAAYGRLDYAFNNAGIEIEQGKLADGNEAEFDAIMAVNVKGVWLCMKHQIPLMLAQGGGAIVNTASVAGLGAAPKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCP-AVIDTDMFRRAYEADPRKAEFAAAMHPLGRVGRVEEIAAAVLYLCCDNAGFTTGIALPVDGGATAI
4ITU Chain:C ((45-269))
------------------------------GAKVALIDLDQGLAERSAAMLSTGGAVAKGFGADVTKAADITAAITSAEQTIGSLTGLVNNAGIA-GFGSVHDADAAAWDRIMAVNVTGTFLASKAALAGMLERHKGTIVNFGSVAGLVGIPTMAAYCAAKGAIVNLTRQMAADYSGRGVRVNAVCPGTVTSTGMGQQLL-----VQARRLAKYPIGRFGTPEDIAEAVIFLLSDQAAFVTGAAFAVDGGMTAI
General information:
TITO was launched using:
RESULT:
Template:
4ITU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115154 for 1707 contacts (-67.5/contact) +
2D Compatibility (PS) -23516 + (NN) -8745 + (LL) 2736
1D Compatibility (HY) -12000 + (ID) 4500
Total energy: -161179.0 ( -94.42 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_4ITU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ITU-query.scw
PDB file :
Tito_Scwrl_4ITU.pdb
: