Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEPNLRGNGKVALVTGAARGIGLGISAWLIAEGWQVVLADNDRERGARVAEAL---GEHAWFVAMDVAQEGQVAMSVAEVLGQFGRLDGLVCNAAIANPRNTPLEALSLGEWTRTLAVNLTGPMLLAKYCTPYLR--AHNGAIVNIASTRAHQSEPDSEAYAASKGGLLALTHALAASLGP-DIRVNALSPGWIDT-------REAAEREAAPL---TELDHDQHLVGRVGTVEDVASLVAWLLSEDAGFVTGQEFLVDGGMTRKMIYLD
1GEG Chain:C ((3-253))
----------KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVA--PSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGM--------
General information:
TITO was launched using:
RESULT:
Template:
1GEG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150438 for 2068 contacts (-72.7/contact) +
2D Compatibility (PS) -25403 + (NN) -13109 + (LL) 748
1D Compatibility (HY) -14800 + (ID) 4150
Total energy: -207152.0 ( -100.17 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_1GEG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GEG-query.scw
PDB file :
Tito_Scwrl_1GEG.pdb
: