Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTRKLGNSGLEIPALVFGGNVFGWTADESTSFRLLDALLDAGLNCIDTADVYSRWVPGHQGGESETLIGKWLKRTGKRDRMVIASKVGMDMGN------GHKGLSAAYIEQALERSLRRLQTDYLDLYQSHTDDPHT-----------------DLEETLSTYGELIKKGKVRVIGASNYDARRLLEARQVSARLNLPSYQSLQPEYNLYDRADYETNLEPTVEELGIGVISYYSLASGFLSGKYRNQADTAG-RA-RGEKVKGYLNERGVAILAALDEVAEQYNANPTQVALAWLIARPTVTAPIASATSLEQLDDLIAATHLKLDEQAIHRLDSASAY |
1LQA Chain:A ((1-339)) | MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRS-FEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEIEAVHQ- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LQA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155072 for 2691 contacts (-57.6/contact) +
2D Compatibility (PS) -34180 + (NN) -17390 + (LL) 16
1D Compatibility (HY) -20000 + (ID) 5200
Total energy: -231826.0 ( -86.15 by residue)
QMean score : 0.522
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