Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIEADYLVIGAGIAGASTGYWLSAHG-RVVVLEREAQPGYHSTGRSAAHYTVAYGTPQVRALTAASRAFFDNPPAGFCEHPLLSPRPEMVVDFSDD-PEELRRQYESGKALVPQMRLLDAEQACSIVPVLRRDKVFGATYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDG-AWEVRCDAGSYRAAVLVNAAGAWCDAIAGLAGVR-PLGLQPKRRSAFIFAPPPGIDCHDWPMLVSL-DESFYLKPDA--GMLLGSPANADPVEAHDVQPEQLDIATGMYLIEEATTLTIRRPEHTWAGLRSFVADGDLVAGYAANAEGFFWVAAQGGYGIQTSAAMGEASAALIRHQPLPAHLREHGLDEAMLSPRRLSP |
| 1Y56 Chain:B ((4-370)) | -EKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF-IGSGSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEEYG-F-SFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKGIIKTGIVVNATNAWANLINAMAGIKTKIPIEPYKHQAVITQPIKRG--TINPMVISFKYGHAYLTQTFHGGIIGGIGYEIGPTYDLTPTYEFLREVSY-YFTKIIPALKNLLILRTWAGYYAKTPDSNPAIGRIEELNDYYIAAGFSGHGFMMAPAVGEMVAELITKGKTKLPVE-------WYDPYRFE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Y56.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175355 for 3227 contacts (-54.3/contact) +
2D Compatibility (PS) -37696 + (NN) -9314 + (LL) 664
1D Compatibility (HY) -13600 + (ID) 3800
Total energy: -239101.0 ( -74.09 by residue)
QMean score : 0.457
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