Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVFQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQ----RLFEALPRLDVLVNNAGISR--DREEYDLATFERVLRLNLSAAMLASQLARP-LLAQRGGSILNIASMYSTFGSADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPL---GAGLKADVEATR---RIMQ---RTPLARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGGYLCA
2DTE Chain:B ((11-245))
------------VIVTGASMGIGRAIAERFVDEGSKVIDLS-----IHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAP-LLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLASREASFITGTCLYVDGG----
General information:
TITO was launched using:
RESULT:
Template:
2DTE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132979 for 1810 contacts (-73.5/contact) +
2D Compatibility (PS) -23971 + (NN) -14531 + (LL) 1696
1D Compatibility (HY) -22400 + (ID) 4400
Total energy: -196585.0 ( -108.61 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_2DTE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DTE-query.scw
PDB file :
Tito_Scwrl_2DTE.pdb
: