Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYVVLEGVDGAGKSTQVGLLKDRFK-NALFTKEPG-GTRMGESLRRIALNE--NISELARAFLFLSDRAEHIESVIKPALKEKKLIISDRSLISGMAYSQFS------SLELNLLATQSVLPEKIILLLINKENLKQRLSLKSLDKIENQGIEKLLTIQQKLKTHAYALQEKFGCEVLELDAQ-KSAKNLHEKIATFIECVV
3TMK Chain:A ((6-203))
KLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDK-IKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYE--TVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVL
General information:
TITO was launched using:
RESULT:
Template:
3TMK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71430 for 1443 contacts (-49.5/contact) +
2D Compatibility (PS) -20458 + (NN) -5431 + (LL) 232
1D Compatibility (HY) -6400 + (ID) 2200
Total energy: -105687.0 ( -73.24 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_3TMK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TMK-query.scw
PDB file :
Tito_Scwrl_3TMK.pdb
: