Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEILIAGGSGFLGKQIIKAALTKGHKVAYLSRHEGKGDIFKDPRLTYIRGDITEADKIHLEDRTFDILIDCIGAIKPNQL--DELNVKATQKAVALCHKNQIPKLVYISANSG---------------------Y-SAYIKSKRKAEQIIKA---SGLDYLFVRPGLMYGEERPLSIFQAKCIK-LFSHLP-FLGIVVQKVFPTKVVIVAEAIVTTLRKKPTQKILSIEELNNK
2X4G Chain:A ((13-240))
VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFS---------EEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVLGELDIGPT-TGRVITAIGNGEMTHYV--AGQRNVIDAAEAGRGLLMALERGRIGERYLLTGHNLE
General information:
TITO was launched using:
RESULT:
Template:
2X4G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89269 for 1469 contacts (-60.8/contact) +
2D Compatibility (PS) -20662 + (NN) -15522 + (LL) 1048
1D Compatibility (HY) -4800 + (ID) 1350
Total energy: -130555.0 ( -88.87 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_2X4G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2X4G-query.scw
PDB file :
Tito_Scwrl_2X4G.pdb
: