Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRLEIVDSKLRQAKKTEEYFNAIRTNIQFSGK-E-NKILAITSVREGEGKSTTSTSLALSLAQAGFKTLLIDADTRNSVMSGTFKATGTIKGLTNYLSGNADLGDIICETNVPRLMVVPSGKVPPNPTALLQNAYFNKMIEAIKNIFDYIIIDTPPIGLVVDAAIIANACDGFILVTQAGRIKRNYVEKAKEQMEQSGSKFLGIILNKVNESVATYGDYGDYGNYGKRDRKRK
3LA6 Chain:A ((67-271))
-----------NPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTN-NVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRASAYQDYGYYEYEYKSDA---
General information:
TITO was launched using:
RESULT:
Template:
3LA6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130840 for 1691 contacts (-77.4/contact) +
2D Compatibility (PS) -22113 + (NN) -8936 + (LL) 844
1D Compatibility (HY) -13200 + (ID) 2850
Total energy: -177095.0 ( -104.73 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_3LA6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LA6-query.scw
PDB file :
Tito_Scwrl_3LA6.pdb
: