Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNRDFRVRDQLETFGVRVSALIIEN--QKLLLIYAP---HLDKYYLPGGALQVGEDSNKAVAREVLEEIGLHSQVGDLAYIVENQFNIKRHHYHSVEFLYFVNLLGQAPESIKEGTHKRHFVWLPIKELTKIDCNPNFLAQDLIEWPGHVVHKIVQN
3EXQ Chain:A ((5-136))
----------RTQPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDD--RQHRKLGLLYRASNFTG-TLK---ASAEGQLSWLPITALTRENS-AASLPEFLQVFTGTASTLVSDS
General information:
TITO was launched using:
RESULT:
Template:
3EXQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70896 for 872 contacts (-81.3/contact) +
2D Compatibility (PS) -13865 + (NN) -1857 + (LL) 1264
1D Compatibility (HY) -1600 + (ID) 1400
Total energy: -88354.0 ( -101.32 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_3EXQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EXQ-query.scw
PDB file :
Tito_Scwrl_3EXQ.pdb
: