Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLPSTIQTLTLFLTSGGVLLSLYVSASLSYLLYSDILLKFSPKITAPTMTLDCTNASNVQAVNRSATKEMTFLLPEPEWTYPRLSCQGSTFQKALLISPHRFGEARGNSAPLIIREPFIACGPKECKHFALTHYAAQPGGYYNGTREDRNKLRHLISVKLGKIPTVENSIFHMAAWSGSACHDGREWTYIGVDGPDSNALIKIKYGEAYTDTYHSYANNILRTQESACNCIGGDCYLMITDGSASGISKCRFLKIREGRIIKEIFPTGRVEHTEECTCGFASNKTIECACRDNNYTAKRPFVKLNVETDTAEIRLMCTETYLDTPRPDDGSITGPC-ESNGDKGRGGIKG-GFVHQRMASKIGRWYSRTMSKTERMGMELYVKYDGDPWTDSDAL-DPSGVMVSIKEPGWYSFGFEIK--DKKCDVPCIGIEMVHDGGKK---TWHSAATAIYCLMGSGQLLWDTVTGVDMAL |
1F8D Chain:A ((2-386)) | ----------------------------------------------------------------------------DFNNLTKGLCTINSWHIYGKDNAVRIGE---DSDVLVTREPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRALISWPLSSPPTVYNSRVECIGWSSTSCHDGKTRMSICISGPNNNASAVIWYNRRPVTEINTWARNILRTQESECVCHNGVCPVVFTDGSATGPAETRIYYFKEGKILKWEPLAGTAKHIEECSC-YGERAEITCTCRDNWQGSNRPVIRIDPVAMTHTSQYICSPVLTDNPRPNDPT-VGKCNDPYPGNNNNGVKGFSYLDGV-----NTWLGRTISIASRSGYEMLKVPNA--LTDDKSKPTQGQTIVLNTDWSGYSGSFMDYWAEGECYRACFYVELIRGRPKEDKVWWTSNSIVSMCSSTEFLGQWDWPDGAKIEY |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1F8D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -121612 for 3475 contacts (-35.0/contact) +
2D Compatibility (PS) -40360 + (NN) -14704 + (LL) 6256
1D Compatibility (HY) -14800 + (ID) 5850
Total energy: -191070.0 ( -54.98 by residue)
QMean score : 0.499
|
|
|