Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLLILTFVAAALAAPFDDDDKIVGGYNCEENSVPYQVSLNSGYHFCGGSLINEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVSTISLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAANS
1YF4 Chain:A ((1-223))
-----------------------IVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN-
General information:
TITO was launched using:
RESULT:
Template:
1YF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124163 for 1910 contacts (-65.0/contact) +
2D Compatibility (PS) -24437 + (NN) -10946 + (LL) 1716
1D Compatibility (HY) -29200 + (ID) 8800
Total energy: -195830.0 ( -102.53 by residue)
QMean score : 0.816
(partial model without unconserved sides chains):
PDB file :
Tito_1YF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YF4-query.scw
PDB file :
Tito_Scwrl_1YF4.pdb
: