Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRALLFLALVGAAVAFPVDDDDKIVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN
3L33 Chain:B ((1-223))
-----------------------IVGGYTCEENSLPYQVSLNSGSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDAGGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIAAN
General information:
TITO was launched using:
RESULT:
Template:
3L33.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148923 for 1897 contacts (-78.5/contact) +
2D Compatibility (PS) -24624 + (NN) -13259 + (LL) 2020
1D Compatibility (HY) -28000 + (ID) 8650
Total energy: -221436.0 ( -116.73 by residue)
QMean score : 0.813
(partial model without unconserved sides chains):
PDB file :
Tito_3L33.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L33-query.scw
PDB file :
Tito_Scwrl_3L33.pdb
: