Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDPKYQRVELNDGHFMPVLGFGTYAPPEVPRNRAVEVTKLAIEAGFRHIDSAYLYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWCTFFQPQMVQPALESSLKKLQLDYVDLYLLHFPMALKPGETPLPKDENGKVIFDTVDLSATWEVMEKCKDAGLAKSIGVSNFNCRQLEMILNKPGLKYKPVCNQVECHPYLNQSKLLDFCKSKDIVLVAHSALGTQRHKLWVDPNSPVLLEDPVLCALAKKHKQTPALIALRYQLQRGVVVLAKSYNEQRIRENIQVFEFQLTSEDMKVLDGLNRNYRYVVMDFLMDHPDYPFSDEY |
| 4F40 Chain:A ((11-279)) | -----AMVTLSNGVKMPQFGLGVWQSP--AGEVTENAVKWALCAGYRHIDTAAIYKNEESVGAGLRAS---G-VPREDVFITTKLWNTEQGYESTLAAFEESRQKLGVDYIDLYLIHWPRGKD----ILSK--------EGKKYLDSWRAFEQLYKEKKVRAIGVSNFHIHHLEDVLAMCT--VTPMVNQVELHPLNNQADLRAFCDAKQIKVEAWSPLG--K-----------LLSNPILSAIGAKYNKTAAQVILRWNIQKNLITIPKSVHRERIEENADIFDFELGAEDVMSIDALNTNSRY------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4F40.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -179382 for 2308 contacts (-77.7/contact) +
2D Compatibility (PS) -28942 + (NN) -16434 + (LL) 2632
1D Compatibility (HY) -19200 + (ID) 5350
Total energy: -246676.0 ( -106.88 by residue)
QMean score : 0.432
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