Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEDFLLSNGYQLGKTIGEGTYSKVKEAFSKKHQRKVAIKVIDKMGGPEEFIQRFLPRELQIVRTLDHKNIIQVYEMLESADGKICLVMELAEGGDVFDCVLNGGPLPESRAKALFRQMVEAIRYCHGCGVAHRDLKCENALLQGFN----LKLTDFGFAKVLPKSHRELSQTFCGSTAYAAPEVLQGIPHDSKKGDVWSMGVVLYVMLCASLPFDDTDIPKMLWQQQKG---VSFPTHLSISADCQDLLKRLLEPDMILRPSIEEVSWHPWLAST
4FG7 Chain:A ((20-277))
---------YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIA-------SMEN----EIAVLHKIKHPNIVALDDIYESG-GHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM--EDPG--------TPGYVAPEVLAQK---SKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIA--
General information:
TITO was launched using:
RESULT:
Template:
4FG7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143573 for 1756 contacts (-81.8/contact) +
2D Compatibility (PS) -24928 + (NN) -11314 + (LL) 956
1D Compatibility (HY) -22000 + (ID) 4150
Total energy: -205009.0 ( -116.75 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_4FG7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FG7-query.scw
PDB file :
Tito_Scwrl_4FG7.pdb
: