Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSITLHSQKDFEFMRKAGRLAAETLDFIAPYVKVGVTTNKLNDLCHDFIVKAGAIPAPLNYKGYPKSICTSKNAVVCHGIPDDKPLKDGDILNIDVTVILNGWYGDTSRMFWAGKPSIKAKRLCDATYVALMEAIKQVKPGNKLNEIGLAVEKYIRDFGYSIVRSYCGHGIGKVFHAPPNVVHFYDQGESLVLKEGMFFTIEPMINAG--KHETLLSRLDNWTVTTRDLSLSAQFEHTLGVTEDGVEIFTLSPKNWHFPPYN
4U69 Chain:A ((47-292))
-QIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETW---PDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRLDSARPHFMS
General information:
TITO was launched using:
RESULT:
Template:
4U69.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157739 for 2170 contacts (-72.7/contact) +
2D Compatibility (PS) -26826 + (NN) -13500 + (LL) 456
1D Compatibility (HY) -18800 + (ID) 5950
Total energy: -222359.0 ( -102.47 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_4U69.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U69-query.scw
PDB file :
Tito_Scwrl_4U69.pdb
: