Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFITFEGIDGSGKTIQSELLANYFKQIHGENNMVL-TREPGGTDFAEKVRGILLKD----SIDPVSELLLLISMRYEHVKKVILPALKKGKIVICDRFIDSTIAYQGYGLGVDLELIRDLHKLVKI-KYPDTTFILDIDVQIGLSRAMDKNKY---EEMNISFYNKVRKGFQEIAINEPDRCSIITEIEAKDNNQVHVEIVNKVTATKPVLLRK
3LV8 Chain:A ((28-232))
KFIVIEGLEGAGKSTAIQVVVETLQQNG--IDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLER-----ELDRIEKMDISFFERARERYLELANSD-DSVVMIDA--AQSIEQVTADIRRALQDWLSQVN--
General information:
TITO was launched using:
RESULT:
Template:
3LV8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92451 for 1506 contacts (-61.4/contact) +
2D Compatibility (PS) -21007 + (NN) -12926 + (LL) 712
1D Compatibility (HY) -9200 + (ID) 3250
Total energy: -138122.0 ( -91.71 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_3LV8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LV8-query.scw
PDB file :
Tito_Scwrl_3LV8.pdb
: