Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNDLKEVLLTEEDIQNICKELGAQLTKDYQG------KPLVCVGILKGSAMFMSDLIKRID---THLSIDFMDVSSYHGGTESTGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVYSN
1PZM Chain:B ((27-201))
--------LVTQEQVWAATAKCAKKIAADYKDFHLTADNPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICA------------VRMLLDVRDSVENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSGRKVDVLVDYPVITIPRAFVIGYGMDFAESYRELRDICVLKK-----
General information:
TITO was launched using:
RESULT:
Template:
1PZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132196 for 1178 contacts (-112.2/contact) +
2D Compatibility (PS) -16375 + (NN) -1900 + (LL) 760
1D Compatibility (HY) -16800 + (ID) 2650
Total energy: -169161.0 ( -143.60 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_1PZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PZM-query.scw
PDB file :
Tito_Scwrl_1PZM.pdb
: