Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDG-PILTTKIEEE
4U76 Chain:A ((52-296))
----SSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGAR-KLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLMHTAP-NVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRLD--
General information:
TITO was launched using:
RESULT:
Template:
4U76.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99368 for 2146 contacts (-46.3/contact) +
2D Compatibility (PS) -27207 + (NN) -14184 + (LL) 1140
1D Compatibility (HY) -13600 + (ID) 3950
Total energy: -157169.0 ( -73.24 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_4U76.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U76-query.scw
PDB file :
Tito_Scwrl_4U76.pdb
: