Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPHINAKIGDFYPQCLLCGDPLRVSYIAKNFLQDAKEITNVRNMLGFSGKYKGKGISLMGHGMGIASCTIYVTELIKTYQVKELLRIGTCGAISPKVGLKDIVMATGASTDSKTNRVRFLNHDLSATPDFELSLRAYQTAKRLGIDLKIGNVFSSDFFYSFETHAFGLMAQYNHLAIEMEAAGLYATAMELNAKALCLCSVSDHLITKEALSPKERIESFDNMITLALEMMS
1K9S Chain:C ((2-230))
-TPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLFYSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVL
General information:
TITO was launched using:
RESULT:
Template:
1K9S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -195918 for 2019 contacts (-97.0/contact) +
2D Compatibility (PS) -23715 + (NN) -4800 + (LL) 208
1D Compatibility (HY) -24000 + (ID) 6200
Total energy: -254425.0 ( -126.02 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_1K9S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K9S-query.scw
PDB file :
Tito_Scwrl_1K9S.pdb
: