Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVIVALGVLAFANVLMATD-VKALVKGCAACHGVKFEKKALGKSKIVNMMSEKEIEEDLMAFKSGANK---NPVMTAQAKKLSDEDIKALAKYIPTLK
1CNO Chain:A ((4-83))
------------------IEAGKAK-AAVCAACHGQNGISQV-PIYPNLAGQKEQYLVAALKAYKAGQRQGGQAPVMQGQATALSDADIANLAAYYASNP
General information:
TITO was launched using:
RESULT:
Template:
1CNO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18754 for 501 contacts (-37.4/contact) +
2D Compatibility (PS) -8005 + (NN) -2162 + (LL) 2708
1D Compatibility (HY) -1600 + (ID) 1200
Total energy: -29013.0 ( -57.91 by residue)
QMean score : 0.357
(partial model without unconserved sides chains):
PDB file :
Tito_1CNO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CNO-query.scw
PDB file :
Tito_Scwrl_1CNO.pdb
: