Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSNTKFPDGFMWGGATAANQFEGGYNLGGKGLACADLFTGGTHTEPRRITAQLEESTFYPSHEAVDFYHHYKEDIKLMAEAGFKVFRMSINWTRIFPTGKEAEPNEEGLQFYEDVFNELKKHQIEPLVTIAHFDIPLALTNEVNGWASRDLIDYYLHFCEVIFKRYKHLVKHWLTFNE----INTATMEIGNYLSLGIRHAEGDFL--HQKDDPKVRYQALHHQFVASAKAVKLGHSINPDFMIGCMIAYMPRYPR-TCEPSDVLLAKQTEAMHSHFCGDVHVKGYYPFYAKTFFKDNGIE--------LEFDPEDEQILREGTVDFYTFSYYLTLCASN-----DPA-YKNSGKSVIGGAENPYLKTNDWGMQTDPVGLRIALNDLYTRY-NIPLMVVENGLGAFDKLEDDGTINDPYRIDYFKEHILQMHKAI-QDGVDLIGFTIWGCIDLVSASTGEMAKRYGIIYVDKYDDGTGDYSRKKKASYYWYKDVISSNGEIGLEE |
| 3VIH Chain:A ((12-447)) | -----FPDEFKLGAATASYQIEGAWDENGKGPNIWDTLT---HEHPDYVVDGATGDI------ADDSYHLYKEDVKILKELGAQVYRFSISWARVLPEGHDNIVNQDGIDYYNNLINELLANGIEPMVTMYHWDLPQAL-QDLGGWPNLVLAKYSENYARVLFKNFGDRVKLWLTFNEPLTFMDGYASEIGMAPSINTP-GIGDYLAAHTVIHAHARIYHLYDQEFRAEQGGKVGISLNINW---CEPATNSAEDRASCEN----YQQFNLGLYAHPI--FTEEGDYPAVLKDRVSRNSADEGYTDSRLPQFTAEEVEYIR-GTHDFLGINFYTALLGKSGVEGYEPSRYRDSGVILTQDAAWP-ISASSW-LKVVPWGFRKELNWIKNEYNNPPVFITENGFS------DYGGLNDTGRVHYYTEHLKEMLKAIHEDGVNVIGYTAWSLMDNFEWLRG-YSEKFGIYAVD---------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VIH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -181751 for 3614 contacts (-50.3/contact) +
2D Compatibility (PS) -42754 + (NN) -2504 + (LL) 2288
1D Compatibility (HY) -26000 + (ID) 7300
Total energy: -258021.0 ( -71.39 by residue)
QMean score : 0.426
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