Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLVATAPRVAVLVEYNDREVL-------EDEVKIKVQFASPKHGTEVVDFRGISPFIDEEFSPEWNLFVSRETNSARGIVFGEFQLGNMVVGEVVERGSKVTEYALGDIVCS----------------------------------------YGPIMETVIVKAVD--NYKLRKLPKGANWKN----AVCYD-PAQFAMSGVRDAHVRAGDYVVVVGLGAIGQIAIQLAKKAGASVVIGVDPLSHRREIAEKHGADATFDPITTDVGLEVKRLTGKLGADSIIETSGNA---------------AALQAALRGIAYGGTISYVAFAKPFPE-GFNLGREAHFNNAKIVFSRAASEPN-PDYPRWDRKRIEETCWELLMNGYLDCSDIID-PVVPFADSAESYMKYVDQQPDLSIKMGITL |
| 1KOL Chain:A ((3-391)) | NRGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICG-SDQHMVRGRTTA------------------------QVGLVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPY-ADFN--LLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDA--AAKIGSLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGE-FDAGV--PKKFVIDP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KOL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -144151 for 2773 contacts (-52.0/contact) +
2D Compatibility (PS) -34578 + (NN) -11073 + (LL) 1864
1D Compatibility (HY) -8000 + (ID) 3300
Total energy: -199238.0 ( -71.85 by residue)
QMean score : 0.426
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