Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKNVAIVGDGGHGKVIRELINARSDTRLAAVLDDKFKTFEGGKEWYTGPPKAVTELRRLIP--DVLFLIAVGNNSVRKQLAERLGL-GKDDFITLIHPSAIVSKSAVIGEGTVIMAGAIIQADARIGAHCIINTGAVAEHDNQISDYVHLSPRATLSGAVSVQEGAHVGTGASVIPQIIIGAWSIVGAGSAVIRSIPDRVTAAGAPARIISSIQTSNKG
4M98 Chain:A ((199-403))NRKLAVIGAGGHGKVVAELAAALGTYGEIVFLDDRTQGSVNGFPVIGTTLL----LENSLSPEQFDITVAVGNNRIRRQITENA-AALGFKLPVLIHPDATVSPSAIIGQGSVVMAKAVVQAGSVLKDGVIVNTAATVDHDCLLDAFVHISPGAHLSGNTRIGEESRIGTGACSRQQTTVGSGVTAGAGAVIVCDIPDGMTVAGNPAKPL---------


General information:
TITO was launched using:
RESULT:

Template: 4M98.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1268 -57597 -45.42 -285.13
target 2D structure prediction score : 0.45
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : -45.42
2D Compatibility (Sec. Struct. Predict.) : 0.45
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.555

(partial model without unconserved sides chains):
PDB file : Tito_4M98.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4M98-query.scw
PDB file : Tito_Scwrl_4M98.pdb: