Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKRRTQEERSAATREALITGARKLWGLRGYAEVGTPEIATEAGVTRGAMYHQFADKAALFRDVVEVVEQDVMARMATLVAASGAATPADAIRAAVDAWLEVSGDPEVRQLILLDAPVVLGWAGFRDVAQRYSLGMTEQLITEAIRAGQLARQPVRPLAQVLIGALDEAAMFIATADDPKRARRETRQVLRRLIDGMLNG
2HYT Chain:A ((5-193))
------RTRAEMEETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVEQIDAEMDERLQAISDT--AEDDWEGFRCRCRAYLEMALEPEIQRIVLRDARAVLGG-ASPD-SQRHCVESMQRLIDNLIRQGVVAEADPQALASLIYGSLAEAAFWIAEGEDGNARLAQGVAALELLLRGLL--
General information:
TITO was launched using:
RESULT:
Template:
2HYT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115221 for 1376 contacts (-83.7/contact) +
2D Compatibility (PS) -20867 + (NN) -10157 + (LL) 664
1D Compatibility (HY) -13600 + (ID) 3050
Total energy: -162231.0 ( -117.90 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_2HYT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HYT-query.scw
PDB file :
Tito_Scwrl_2HYT.pdb
: