Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASEFSRAELAAAFEKFEKTVARAAATRDWDCWVQHYTPDVEYIEHAAGIMRGRQRVRAWIQETM-TTFPGSHMVAFPSLWSVIDESTGRIICELDNPMLDP-------GDGSVISATNISIITYAGNGQWCRQEDIYNPLRFLRAAMKWCRKAQELGTLDEDAARWMRRHGGP
4LGQ Chain:A ((6-138))
-------MDTSKAVIQRFNRE---VIENGDMAAFAELVAPDFVNHSAPPGVSPGPDGFAGFFTGMLHPALSD---IRVHIHEQIEENG--KVVTRKTIEATHTGAFFGQPASGKRIAIHAMDIVVVR-DGKYAEHWSCADLYGALAQIR--------------------------
General information:
TITO was launched using:
RESULT:
Template:
4LGQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52471 for 881 contacts (-59.6/contact) +
2D Compatibility (PS) -13718 + (NN) -6809 + (LL) 2376
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -74422.0 ( -84.47 by residue)
QMean score : 0.252
(partial model without unconserved sides chains):
PDB file :
Tito_4LGQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LGQ-query.scw
PDB file :
Tito_Scwrl_4LGQ.pdb
: