Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRVQVGH-GLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIA-GVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDRLNTERT
3ND6 Chain:A ((5-158))
---ALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFI------LFTPEEKKYLIEEATKEMPNVRVIMQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQK------
General information:
TITO was launched using:
RESULT:
Template:
3ND6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122689 for 1113 contacts (-110.2/contact) +
2D Compatibility (PS) -15719 + (NN) -6756 + (LL) 360
1D Compatibility (HY) -14800 + (ID) 2950
Total energy: -162554.0 ( -146.05 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3ND6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ND6-query.scw
PDB file :
Tito_Scwrl_3ND6.pdb
: