Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSLAERTVLVTGANRGMGREYVAQLLGRKVAKVYAATRNPLAIDVS---DPRVIPLQLDVTDAVSVAEAADLATDVGILINNAGISRASSVLDKDTSALRGELETNLFGPLALASAFADRIAE--RSGAIVNVSSVLAWLPLGM--SYGVSKAAMWSATESMRIELAPRGVQVVGVYVGLVDTDMGRFA--------------DA-PKSDPADVVRQVLDGIEAGKEDVLADEMSRQVRASLNVPARERIARLMGN
1CYD Chain:A ((3-227))
-LNFSGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRS------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1CYD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112495 for 1682 contacts (-66.9/contact) +
2D Compatibility (PS) -21848 + (NN) -4728 + (LL) 2824
1D Compatibility (HY) -12400 + (ID) 2850
Total energy: -151497.0 ( -90.07 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_1CYD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CYD-query.scw
PDB file :
Tito_Scwrl_1CYD.pdb
: