Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADPRPDPDELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTAAGHAGELLSVPIGAHRVLVLAGRIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADLQVGQPVLISDHLNLTARSPLVG------GE-FVDLTDAYSPRLREL----ARQSDPQLAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTNLAAGITGEPLSHAEVLAAGAASATRMGALLADVIARF
1YQU Chain:B ((28-275))
-----------------------------VAFILGSG-LGALADQIENAVAISYEKLPGFPVS-------ELVLGHLQGVPVVCMKGRGHFYEGRGMTIMTDAIRTFKLLGCELLFCTNAAGSLRPEVGAGSLVALKDHINTMPGTPMVGLNDDRFGERFFSLANAYDAEYRALLQKVAKEEGFPLTEGVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITN-----------------------QNFINLICGFLRK-
General information:
TITO was launched using:
RESULT:
Template:
1YQU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148945 for 1688 contacts (-88.2/contact) +
2D Compatibility (PS) -22368 + (NN) -5916 + (LL) 3524
1D Compatibility (HY) -20400 + (ID) 4000
Total energy: -198105.0 ( -117.36 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_1YQU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YQU-query.scw
PDB file :
Tito_Scwrl_1YQU.pdb
: