Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDELRRAEGIDA
4NDW Chain:A ((3-130))
--TTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDELRRAEGI--
General information:
TITO was launched using:
RESULT:
Template:
4NDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49122 for 747 contacts (-65.8/contact) +
2D Compatibility (PS) -14475 + (NN) -9685 + (LL) 248
1D Compatibility (HY) -14800 + (ID) 6400
Total energy: -94234.0 ( -126.15 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_4NDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NDW-query.scw
PDB file :
Tito_Scwrl_4NDW.pdb
: