Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNDAVPAGNFVPPLILHSDHGGSAMSSSAHRGRILHFLGDPAKLGDKAWEYFEDGLLWI-EHGHVRALDHATYLLPQLPADLPLEEHPQRLLLPGFVDCHVHYPQLGVIASYG------TQLLDWLETHTFPAEQRFADAGYAAAQAELFLDELLRHGTTTALVFGTVH-----------AVSAEAFFQAAQKRRLRMIAGKVLMDRNAPP----A-----LCDTAASGYAESRALIERWHGNGRLQYAVTPRFAPTSSPEQLAAAARLLDEYPGVYLHTHLSENLKEVAWVGELFPQAQDYLDVYHRAGLVGERSVFAHGIHLSERECRCLAHKNAALAHCPSSNLFIGSGLFDLGRAQQYGIRVGIGSDVGGGTSLSLLANLADAYKIQQLR----------GTSLDPFQALYLATLGGARALDLDGLVGNFLPGREADFVALDLAATPMIAQRMEHARGLADTLFVLNTLGDDRAVAETWVMGERRHVKG |
| 3MDU Chain:A ((2-432)) | --------------------------SAIFAERALL-----------PEGWARNVRFEISADGVLAEIRPDAN--------ADGAERLGGAVLPGMPNLHSHAFQRAMAGLAEVAGNPNDSFWTWRELMY-RMVAR-LSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGIGLTLLPVLYSHAGFGGQPASEGQRRFINGSEAYLELLQRLRAPL-EAAGHSLGLCFHSLRAVTPQQIATVLA-AGHD-DLPVHIHIAEQQKEVDDCQAWSG--RRPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVAGLCLSTEANLGDGIFPATDFLAQGGRLGIGSDSHV--SLSVVEELRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALGQ--PIGSLAVGRRADLLVLDGNDPYLASA------EGDALLNRWLFAGGDRQVRDVMVAGRWVVRDG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -218231 for 3578 contacts (-61.0/contact) +
2D Compatibility (PS) -42463 + (NN) -20239 + (LL) 2172
1D Compatibility (HY) -4800 + (ID) 4300
Total energy: -287861.0 ( -80.45 by residue)
QMean score : 0.502
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