Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRLEIVDSKLRQAKKTEEYFNAIRTNIQFSGK-E-NKILAITSVREGEGKSTTSTSLALSLAQAGFKTLLIDADTRNSVMSGTFKATGTIKGLTNYLSGNADLGDIICETNVPRLMVVPSGKVPPNPTALLQNAYFNKMIEAIKNIFDYIIIDTPPIGLVVDAAIIANACDGFILVTQAGRIKRNYVEKAKEQMEQSGSKFLGIILNKVNESVATYGDYGDYGNYGKRDRKRK
3CIO Chain:A ((80-284))
------------PADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVS-NEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRASTAYSYGYNY----------
General information:
TITO was launched using:
RESULT:
Template:
3CIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116566 for 1691 contacts (-68.9/contact) +
2D Compatibility (PS) -22421 + (NN) -10279 + (LL) 692
1D Compatibility (HY) -10800 + (ID) 3300
Total energy: -162674.0 ( -96.20 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_3CIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CIO-query.scw
PDB file :
Tito_Scwrl_3CIO.pdb
: