Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
2FV8 Chain:A ((23-201))
MIRKKLVVVGDGACGKTCLLIVFSKDEFP-------FENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK------------
General information:
TITO was launched using:
RESULT:
Template:
2FV8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140541 for 1402 contacts (-100.2/contact) +
2D Compatibility (PS) -18585 + (NN) -9275 + (LL) 1188
1D Compatibility (HY) -18000 + (ID) 4500
Total energy: -189713.0 ( -135.32 by residue)
QMean score : 0.727
(partial model without unconserved sides chains):
PDB file :
Tito_2FV8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FV8-query.scw
PDB file :
Tito_Scwrl_2FV8.pdb
: