Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNLLLLALPVLASRAYAAPAPGQALQRVGIVGGQEAPRSKWPWQVSLRVHG--PYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLREQHLYY---QDQLLPVSRIIVHPQFYTAQ--IGADIALLELEEP----VNVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGN--TRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVPKKP
3MHW Chain:U ((1-247))
------------------------------IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFID-YPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSAD-LAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYL-YPEQLKMTVVKLISHRECQQPHYYG-------SEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE--
General information:
TITO was launched using:
RESULT:
Template:
3MHW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -185337 for 2011 contacts (-92.2/contact) +
2D Compatibility (PS) -24872 + (NN) -11544 + (LL) 2652
1D Compatibility (HY) -14800 + (ID) 4000
Total energy: -237901.0 ( -118.30 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_3MHW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MHW-query.scw
PDB file :
Tito_Scwrl_3MHW.pdb
: