Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGTRSLFVNFIGKLNDKSNEITSKLVICPPFTSLP-GNIELNSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERTH---ETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKS---RLPIHGEYTVAYEPIWAIGTGHVPSNNAIAEVIEVIQSYTSKKHV----------IYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
1TPV Chain:B ((5-235))
--FFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGNPERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWL-KTHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKPEFVDIINAKH----
General information:
TITO was launched using:
RESULT:
Template:
1TPV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111685 for 1724 contacts (-64.8/contact) +
2D Compatibility (PS) -23111 + (NN) -7964 + (LL) 232
1D Compatibility (HY) -14000 + (ID) 4150
Total energy: -160678.0 ( -93.20 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_1TPV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TPV-query.scw
PDB file :
Tito_Scwrl_1TPV.pdb
: