Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHASTGKGSKIKYSRVLFKISGEALMGSRPFGHDMELIDQLCKDISDIYKLGVQVCIVVGGGNIFRGASASLSGCERASSDYIGMLATIINALILQNFLEKNSVNSKVLSAIPMVTICEPYIRRKAIHHLEKGRVVIFAAGTGNPFFTTDTAAALRAVETNCDAILKGTQVNGVYSADPKKNEDAVMYDRLSYMDLLTRDLKVVDASAISLARENSIPIIVFSLKEE-KIVNIVKGHGTYTIVSDCE
1YBD Chain:A ((4-239))
---------QIKYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC--
General information:
TITO was launched using:
RESULT:
Template:
1YBD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -219308 for 1982 contacts (-110.6/contact) +
2D Compatibility (PS) -26460 + (NN) -15985 + (LL) 272
1D Compatibility (HY) -22000 + (ID) 6100
Total energy: -289581.0 ( -146.11 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_1YBD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YBD-query.scw
PDB file :
Tito_Scwrl_1YBD.pdb
: