Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMQQLSLKHRLNNGDSVYGIFNS-IPDPLMIEVIAASGYDFVVIDTEHVAINDETLAHLIRAAEAAHIIPIVRVTAVIDRDIIKVLDMGARGIIVPHVKDRETVEHIVKLSRYYPQGLRSLNGGRMARFGRTPLLDAMEMANEHIMVIAMIEDVEGVMAIDDIAQVEGLDMIVEGAADLSQSLGIPWQTRDDQVTSHVQHIFEVVNAHGKHFCALPREDE-DIAKWQAQGVQTFILGDDRGKIYRHLSASLATSKQKGDDG
3QZ6 Chain:A ((3-258))
---AMFLKKKLSAGKSVVGTMLNLVYNPDIVRIYAEAGLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQRLLDIGAEGFMIPGVQSAETMRETVRLAKYPPLGERGVGGSIVTDFKPVNWAEWVQERNDEIFIMAQIEHVKAVEDIDSILAVQGVDAVIFGPRDLSNDLGIIGQTEHPKVYECYEKVYRAADRQGVVKGFFTAADAAKMGWAVERGAQMLLWSGDVAALQTYTAKGVKTIKELPG--
General information:
TITO was launched using:
RESULT:
Template:
3QZ6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176972 for 2023 contacts (-87.5/contact) +
2D Compatibility (PS) -28242 + (NN) -17784 + (LL) 288
1D Compatibility (HY) -18400 + (ID) 3450
Total energy: -244560.0 ( -120.89 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_3QZ6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QZ6-query.scw
PDB file :
Tito_Scwrl_3QZ6.pdb
: