Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQIEFKNVSKVY-PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNIGMIFQHFNLVKRSSVLRNVLSGRVGYHPTWKMVLG--LFPKEDKIKAMDALERVNILDKYNQRSDELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE---ATDDVFSEIYGRTIKEDEKLGVN
2PMK Chain:A ((4-238))
---ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL---RRQVGVVLQDNVLLNR-SIIDNISLANPGM-SVEKVIYAAKLAGAHDFISELR--EGYNTI--VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY-------------
General information:
TITO was launched using:
RESULT:
Template:
2PMK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113398 for 1768 contacts (-64.1/contact) +
2D Compatibility (PS) -24274 + (NN) -3794 + (LL) 2044
1D Compatibility (HY) -18800 + (ID) 4000
Total energy: -162222.0 ( -91.75 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_2PMK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PMK-query.scw
PDB file :
Tito_Scwrl_2PMK.pdb
: