Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLNGKDKVHVQRVVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTN-QDVYLEYDK-EKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKY-FSPNGKYRNVFIEAQNKAKQQKLNIWSK
4RKB Chain:A ((9-135))
---------------------------------------------KEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPEF------NEKYGPEASAFTKKMTENAKKIEVEFDKGQRTDKYGRGLAYIY-ADGKMTNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS-
General information:
TITO was launched using:
RESULT:
Template:
4RKB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3432 for 983 contacts (-3.5/contact) +
2D Compatibility (PS) -13397 + (NN) -5186 + (LL) 3536
1D Compatibility (HY) -8000 + (ID) 2400
Total energy: -28879.0 ( -29.38 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_4RKB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RKB-query.scw
PDB file :
Tito_Scwrl_4RKB.pdb
: