Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKIQKIHPNALIPKYQTEGSSGFDLHAVEEVVIKPHSVGLVRIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSD-KDFKVQVGDRIAQGVVQKTYKAEFIECEQLDETSRGSGGFGSTGVSKA
1SJN Chain:B ((5-137))
--LAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSR--------
General information:
TITO was launched using:
RESULT:
Template:
1SJN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70649 for 883 contacts (-80.0/contact) +
2D Compatibility (PS) -13812 + (NN) -1291 + (LL) -68
1D Compatibility (HY) -8800 + (ID) 2550
Total energy: -97170.0 ( -110.05 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_1SJN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SJN-query.scw
PDB file :
Tito_Scwrl_1SJN.pdb
: