Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELGFLGHYHPILLPLE---SRIKNEFLHLGLSGANVTLPFKERAFQICDKIKGIALECASVNTLVLE-NDELVGYNTDALGFYLSLKHQNY-QNDQNALILGAGGSAKALACGLQKQGLKVSVLNRSARG-LD---FFQR---LGCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKESKLAYDLAYGF-LTPFLSLAKELKIP-FQDGKDMLIYQASLSFEKFSDSQIPYSKAFEVMRSVF |
| 1NYT Chain:A ((1-269)) | --METYAVFGNPIAHSKSPFIHQQ----FAQQLNIEHPYGRVLAPINDFINTLNAFFS-AGGKGANVTVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSL---IHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEEL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129538 for 2181 contacts (-59.4/contact) +
2D Compatibility (PS) -26919 + (NN) -7148 + (LL) 716
1D Compatibility (HY) -14800 + (ID) 4000
Total energy: -181689.0 ( -83.31 by residue)
QMean score : 0.476
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