Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQSHQNLQSQFFIEHILQILPHRYPMLLVDRIIELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
2GLL Chain:D ((20-171))
-------LQSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
General information:
TITO was launched using:
RESULT:
Template:
2GLL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119899 for 1160 contacts (-103.4/contact) +
2D Compatibility (PS) -15793 + (NN) -1232 + (LL) 488
1D Compatibility (HY) -24400 + (ID) 7500
Total energy: -168336.0 ( -145.12 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_2GLL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GLL-query.scw
PDB file :
Tito_Scwrl_2GLL.pdb
: