Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKPL-IDMKNLTKTYTLGGETFK-ALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLS--EIRNKKIGFIFQ--QFNLLPKLSAFENVELPLIYAGLSVSAREKAAIECLEKVGL-LEKRRNLPTQLSGGQQQRVAIARALAGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTI-VMITHD-PTIASYGTRSIRIQDGKLFHEEATQA
4MKI Chain:B ((5-226))
----MPIKVENVSFIYNEGTPYATVALKDINFSIDDEEFVGIIGHTGSGKSTLIQQLNGLLKPSKGKIYINGIDI---TDKKVSLKDIR-KQVGLVFQYPEYQLFEE-TVFKDIAFGPSNLGLSEEEVKERVYEAMEIVGISKELADKSPFELSGGQKRRVAIAGILAMRPKILILDEPTAGLDPKGKQEILNKIKEIHDKYKMITILVSHNMEDIARIADKIIVMNRGKI--------
General information:
TITO was launched using:
RESULT:
Template:
4MKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91206 for 1637 contacts (-55.7/contact) +
2D Compatibility (PS) -23868 + (NN) -13688 + (LL) 1304
1D Compatibility (HY) -18400 + (ID) 3700
Total energy: -149558.0 ( -91.36 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_4MKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKI-query.scw
PDB file :
Tito_Scwrl_4MKI.pdb
: