Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LNLKDTVKLANGVEMPRLGFGVWKVQD--GDEAVNSVKWAIEAGYISIDTAAAYKNEEGVGQAIK----ESGIKREDLFVTTKLWNAEQGYESTLAAFDESLRKLELDYVDLYLIHWPVKGK--------------------FKDTWRAFEKLYKDKRVRAIGVCNFHEHHLKELMEDA---EIAPMVNQIELHPQLTQEPLRKFCAENNIVVEAWSPLGNGK-----------LLSNPEIKAIADAHGKSVAQVILRWDLQIGVVTIPKSVHQERIIQNADIFDFELTEEEVAKISGLNKDERTGPDPDNFNF |
2IPJ Chain:B ((5-302)) | -----CVKLNDGHFMPVLGFGTAAPAEVPKSKALEAVKLAIEAGFHHIDSAHVYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSNSHRPELVRPALERSLKNLQLDYVDLYLIHFPVSVKPGEEVIPKDENGKILFDTVDLCATWEAMEKCKDAGLAKSIGVSNFN-HRLLEMILNKPGLKYKPVCNQVECHPYFNQRKLLDFCKSKDIVLVAYSALGSHREEPWVDPNSPVLLEDPVLCALAKKHKRTPALIALRYQLQRGVVVLAKSYNEQRIRQNVQVFEFQLTSEEMKAIDGLNRNVR---------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2IPJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -123405 for 2179 contacts (-56.6/contact) +
2D Compatibility (PS) -28006 + (NN) -9999 + (LL) -84
1D Compatibility (HY) -24800 + (ID) 5800
Total energy: -192094.0 ( -88.16 by residue)
QMean score : 0.521
|
|
|