Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIFVWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGRKTYESLGKALPNRKTIVLTRDQGLKLDDAEILHSKEAVLALAETGEP-IYIVGGAEIYRLFMDVADQLIVTKIDAEFEADTAFPEVDWENFSEVAKEFHEKDEKNKYNYTFYTYERN
3TQB Chain:A ((2-160))
IITLIAAMDKNRLIGRNNELPWHLPADLAHFKSITLGKPIVMGRRTFDSIGKPLPHRRNIVITQQKNLIIEGCDIFYSLDDALS-ALTKEPEVIIIGGARIFKEALPKADKMILTIINHSFEGDVYFPEWNDKEWKITSQIKH---------FQFLELRR-
General information:
TITO was launched using:
RESULT:
Template:
3TQB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98147 for 1085 contacts (-90.5/contact) +
2D Compatibility (PS) -16089 + (NN) -5053 + (LL) 352
1D Compatibility (HY) -13200 + (ID) 2950
Total energy: -135087.0 ( -124.50 by residue)
QMean score : 0.651
(partial model without unconserved sides chains):
PDB file :
Tito_3TQB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TQB-query.scw
PDB file :
Tito_Scwrl_3TQB.pdb
: