Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLEKVNEAVAKIRESYTGTPKIGLILGSGLGVLADEVNQPIKLSYSEIPHFPVSTVEGHAGQFVFGELENKEVVAMQGRFHFYEGYSMQDVTFPVRVMKELGVEVLIVTNAAGGVNELYSAGDLMLISDHIN---FTGTSPLIGPNDEHFGPRFPDMSEAYNLALRVDARLIAQEL--NLTIREGVYAGFSGPTYETPAEIQMMRTLGADAVGMSTVPEVIIANHAGLRVLGISCITNMAAGILD--QPLSHTEVIETTDQVRSTFLQYVKAIVAKIS
3GB9 Chain:B ((47-304))
--------------------PQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRST-----GRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQMGEQRELQEGTYVMVAGPSFQTVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITDKV--IMDYE----------AGKQAAQKLEQFVSILMASI-
General information:
TITO was launched using:
RESULT:
Template:
3GB9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166446 for 1907 contacts (-87.3/contact) +
2D Compatibility (PS) -24909 + (NN) -8310 + (LL) 2772
1D Compatibility (HY) -24400 + (ID) 6100
Total energy: -227393.0 ( -119.24 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_3GB9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GB9-query.scw
PDB file :
Tito_Scwrl_3GB9.pdb
: